Thanks for that, Now understand that it was about MVC View Folder.
so you have view folder like below
Out of this only two files you are deploying right.
We have option call hide, which you can hide those 3 state file and deploy the application.
Keeping all 5 state file and deploying application will not affect anything because you are calling 2 states only. But those 3 file will be extra files for your application while you deploy.
Simple thing you can do is, after deploying application in the deployed folder remove those 3 files and publish the folder in the IIS Server. So we don't need to change anything, in future if you going for all the 5 state release it will be easy for you to keep the same folder structure.